Select UseManual to use the structure generation parameters given in the Overlay Grains and Random Field Settings, Grain Generator, and Random Field panels as starting point for the optimization.

Select GlobalOptimizer to run a global optimization to find good initial parameters for the local optimizer. In this case the values selected in the Overlay Grains and Random Field Settings, Grain Generator, and Random Field panels are not used.

In this panel you setup the initial structure for the local optimization.

The Overlay Strength is the field overlay strength in percentage. At 100% overlay strength the result will only show the grain package, while at 0% overlay strength the result will show only the Gaussian random field. If no Random Field is used, this value is automatically set to 100%. If no Grain Generator is used, this value is automatically set to 0%.

Select the basic shape used to generate the 3D structure. Select None as Grain Generator to use only the Random Field for the structure generation. The app uses the GrainGeo - Create Grains command to create the grain structure. Be aware that all lengths are given in the unit voxel.

For the Sphere shape, the diameters are Gaussian distributed. Select the mean diameter and the standard deviation.

For the Ellipsoid shape, the first diameter is Gaussian distributed. Select the mean diameter and the standard deviation. For the other two diameters, the same fixed aspect ratio is used. The selected aspect ratio must be between 0.25 and 1. Therefore, only prolate spheroid shapes are possible here.

For the Convex Polyhedron shape, an (prolate spheroid) ellipsoid is used as enclosing object with matching Enclosing Object Volume (see the GrainGeo user guide for details). Select the mean diameter and the standard deviation. For the other two diameters, the same fixed aspect ratio is used. Again, the selected aspect ratio must be between 0.25 and 1.

Select None as Random Field to use only the Grain Generator for the structure generation.

Select OneIsotropicField to use the GrainGeo - Stochastic Field Thresholding command to create a random field. With the Correlation Function, you can switch between the Isotropic Squared Exponential (Gaussian) generation mode and the Isotropic Exponential (Laplacian) generation mode.

Enter the Correlation Length for the selected random field

Select TwoIsotropicFields to use the GrainGeo - Stochastic Field Thresholding command to create a random field with the Custom Generation Option using two kernels. You can define the Relative Influence of the first kernel, select a Correlation Function for each kernel and give both Correlation Lengths.

It is possible to use GrainGeo - Add Binder as an additional structure generation step. Select Isotropic and enter the desired Binder Solid Volume Percentage.

This function does not add another 'binder' material to the structure. Instead, it fills the small pores between the generated grains with the same material, thus creating a well-connected solid phase from unconnected objects. The added material isotropic and homogeneously distributed inside the structure.

The error function is a combination of several components. Define the error function components from the list of physical properties. These structure properties will be matched by the twin as good as possible.

Select Pore and Solid Granulometry to use the PoroDict - Pore Size Distribution (Granulometry)  and MatDict - Solid Size Distribution commands to compare the digital twin with the original 3D image.

Select Porosimetry to use the PoroDict - Pore Size Distribution (Porosimetry) command to compare the digital twin with the original 3D image.

Select Pore and Solid Chord Length to use the PoroDict - Chord Length Distribution and MatDict - Chord Length Distribution commands to compare the digital twin with the original 3D image.

Select Specific Surface Area to use the MatDict - Estimate Surface Area command to compare the digital twin with the original 3D image.

Select Permeability to use the FlowDict-Stokes command to determine the permeability. Select the space directions used to compare the digital twin with the original 3D structure. To use this option, a FlowDict license is required.

Select Diffusivity to use the DiffuDict - Bulk Diffusion command to determine the diffusivity. Select the space directions used to compare the digital twin with the original 3D structure. To use this option, a DiffuDict license is required.

You must select at least one of these criteria, otherwise the optimizer will fail with an error message.

Select the sets of parameters to be used as optimization variables for fitting the reference structure. If not selected, the according parameters from the Digital Twin Setup will stay constant during the optimization.

Select Optimize Overlay Strength to vary the Overlay Strength.

Select Optimize Grain Generator Parameters to vary the diameter, standard deviation and aspect ratio parameters of the Grain Generator. Note that the optimizer does not optimize the generator type, i.e. does not vary between Sphere, Ellipsoid and ConvexPolyhedron shapes.

Select Optimize Random Field Parameters to vary the correlation length(s) and the relative influence parameters of the Random Field. Note that the optimizer does not vary between the OneIsotropicField and TwoIsotropicFields models.

Select Optimize Binder Parameters to vary the solid volume percentage of the binder.

You must select at least one of these options, otherwise the optimizer will fail with an error message.

Set the stopping criterion by choosing a maximal number of iterations or set a tolerance accuracy to reach. Note that choosing none or setting the Maximal Number of Optimization Iterations to 0 will perform one single iteration step only.

The selected tolerance applies to the structure generation parameters varied in each iteration step. If the change in these parameters becomes smaller that the selected tolerance, the optimizer stops. The tolerance does not set a limit value for the resulting error function of the found digital twin.

The Population Size is the number of random samples taken per parameter within the parameter bounds. A large value improves the exploration but increases the runtime for the Differential Evolution. The minimal value allowed is 2.

Global Iterations are the maximum number of generations to evolve the population in the Differential Evolution. Higher values refine the results but require more evaluations. The minimal value allowed is 2.

In total, the number of function evaluations can be up to Population Size times Global Iterations times the number of parameters. The number of parameters is defined by the selected Optimization Components.

Check the box to set the size of the structure model used during the optimization.

If the box is not checked, the app chooses a size automatically.

If checked, all intermediate results are deleted.

Activating the check box enables to set several additional parameter.

Check Invert Grains for Overlay to switch pore and solid material. In this case, the grain generator creates the pore space, and the background becomes the solid material.

Each granular object is created with a random orientation. By default, the orientation is isotropic, and every direction has the same probability. Check the Specify the Grain Orientation box to define an anisotropic distribution of the object's orientation.

Define the orientation tensor as described for the Object Options of the GrainGeo - Create Grains command. The three Orientation Tensor parameters entered here correspond to the diagonal entries of the orientation tensor.

The tensor describes the distribution of the grain's main direction, which corresponds to the long axis of the prolate spheroid.  

The created random field contains values distributed around mean value 0. Check Square Random Field to square these values, thus turning all values positive. Checking Invert Squared Field further inverts them. These operations fundamentally change the stochastic filed and the shape of the structures that appear after applying the threshold. See the Field Post-Processing in GrainGeo's Stochastic Field Thresholding command.

Increasing the step size of the local optimization may improve the results of the optimizer.

The structure generation is a stochastic process, therefore each test structure is not only dependent on the parameters to optimize, but also on a random number. The computed matching criteria are therefore dependent on the random number, too. If the dependency on the random number is larger that the dependency on the structure generation parameters, the local optimization may become stuck and cannot find the correct direction for the parameter search. Therefore, it may help to enlarge the step size to increase the effect of the parameter choice on the result and to help the algorithm find the new search direction.